RNA-Seq of Chondrus crispus - SRA

SRX7711368: RNA-Seq of Chondrus crispus
1 ILLUMINA (Illumina HiSeq 4000) run: 35.7M spots, 5.4G bases, 1.8Gb downloads

Design: Samples were cleaned with sterile sea water, patted to remove excess liquid and flash frozen in liquid nitrogen on-site for later use. RNA was extracted using a the Qiagen RNeasy Plant minikit and following the manufacturers protocol. Library preparation was done by the sequencing company.

Submitted by: Station Biologique de Roscoff

Study: Transcriptome analysis of life cycle stages of Chondrus crispus

PRJNA606187 • SRP248382 • All experiments • All runs

show Abstracthide Abstract

Chondrus crispus is a red macroalga with a haploid-diploid life cycle, alternating between male and female gametophytes (n) and tetrasporophytes (2n). The gametophyte and tetrasporophyte life stages are isomorphic yet they display different physiological properties, including cell wall composition. We carried out transcriptomic studies on confirmed Chondrus male and female gametophytes and tetrasporophytes in order to identify genes differentially regulated between life cycle stages as well as candidates predicted or shown to be implicated in carrageenan biosynthesis.

Sample: T2

SAMN14087159 • SRS6134445 • All experiments • All runs

Organism: Chondrus crispus

Library:

Name: ADPH-76

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Runs: 1 run, 35.7M spots, 5.4G bases, 1.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR11071206	35,706,334	5.4G	1.8Gb	2021-03-31

ID:: 10080077

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